Difference between revisions of "Pindel"
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Revision as of 18:37, 13 February 2018
Description
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.
Environment Modules
Run module spider pindel to find out what environment modules are available for this application.
System Variables
- HPC_{{#uppercase:pindel}}_DIR - installation directory
- HPC_{{#uppercase:pindel}}_BIN - executable directory