Difference between revisions of "SALSA"
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Moskalenko (talk | contribs) (Created page with "Category:SoftwareCategory:Biology {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|salsa}} |{{#vardefine:url|https://github.com/machinegun/SALSA}} <!--CONFIGURATION:...") |
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If you publish research that uses {{#var:app}} you have to cite it as follows: | If you publish research that uses {{#var:app}} you have to cite it as follows: | ||
| − | + | Ghurye, J., Pop, M., Koren, S., Bickhart, D., & Chin, C. S. (2017). Scaffolding of long read assemblies using long range contact information. BMC genomics, 18(1), 527. [https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-017-3879-z link]. | |
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Revision as of 16:51, 16 October 2017
Description
A tool to scaffold long read assemblies with Hi-C
Required Modules
Serial
- gcc/5.2.0
- salsa
System Variables
- HPC_{{#uppercase:salsa}}_DIR - installation directory
Citation
If you publish research that uses salsa you have to cite it as follows:
Ghurye, J., Pop, M., Koren, S., Bickhart, D., & Chin, C. S. (2017). Scaffolding of long read assemblies using long range contact information. BMC genomics, 18(1), 527. link.