PBJelly: Difference between revisions
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Revision as of 13:31, 29 August 2014
Description
PBJelly is a highly automated pipeline that aligns long sequencing reads (such a PacBio RS reads or long 454 reads in fasta format) to high-confidence draft assembles. PBJelly fills or reduces as many captured gaps as possible to produce upgraded draft genomes. Each step in PBJelly's workflow can be run on a cluster, thus parallelizing the gap filling process for rapid turn around, even for very large eukaryotic genomes.
Required Modules
Serial
- PBJelly
System Variables
- HPC_{{#uppercase:PBJelly}}_DIR
- HPC_{{#uppercase:PBJelly}}_BIN
- HPC_{{#uppercase:PBJelly}}_CONF
- HPC_{{#uppercase:PBJelly}}_TEST