Difference between revisions of "Structure"
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You will have to provide the mainparams and extraparams files in a working | You will have to provide the mainparams and extraparams files in a working | ||
directory from which you run the software or via the arguments: | directory from which you run the software or via the arguments: | ||
| − | * -m path/to/mainparams | + | * -m /path/to/mainparams |
| − | * -e path/to/extraparams | + | * -e /path/to/extraparams |
| − | * -s path/to/STRATparams | + | * -s /path/to/STRATparams |
Sample files are located in the''$HPC_STRUCTURE_CONF'' directory. | Sample files are located in the''$HPC_STRUCTURE_CONF'' directory. | ||
Revision as of 20:31, 16 August 2013
Description
Structure implements a model-based clustering method for inferring population structure using genotype data consisting of unlinked markers
You will have to provide the mainparams and extraparams files in a working directory from which you run the software or via the arguments:
- -m /path/to/mainparams
- -e /path/to/extraparams
- -s /path/to/STRATparams
Sample files are located in the$HPC_STRUCTURE_CONF directory.
Required Modules
Serial
- structure
System Variables
- HPC_{{#uppercase:structure}}_DIR - installation directory
- HPC_STRUCTURE_BIN - executable directory
- HPC_STRUCTURE_DOC - documentation directory
- HPC_STRUCTURE_CONF - directory with sample configuration files