Difference between revisions of "Structure"
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directory from which you run the software. Sample files are located in | directory from which you run the software. Sample files are located in | ||
''$HPC_STRUCTURE_CONF'' directory. | ''$HPC_STRUCTURE_CONF'' directory. | ||
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==Required Modules== | ==Required Modules== | ||
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===Serial=== | ===Serial=== | ||
*{{#var:app}} | *{{#var:app}} | ||
| + | ==System Variables== | ||
| + | * HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | ||
* HPC_STRUCTURE_BIN - executable directory | * HPC_STRUCTURE_BIN - executable directory | ||
* HPC_STRUCTURE_DOC - documentation directory | * HPC_STRUCTURE_DOC - documentation directory | ||
Revision as of 19:57, 10 August 2012
Description
Structure implements a model-based clustering method for inferring population structure using genotype data consisting of unlinked markers
You will have to provide the mainparams and extraparams files in a working directory from which you run the software. Sample files are located in $HPC_STRUCTURE_CONF directory.
Required Modules
Serial
- structure
System Variables
- HPC_{{#uppercase:structure}}_DIR - installation directory
- HPC_STRUCTURE_BIN - executable directory
- HPC_STRUCTURE_DOC - documentation directory
- HPC_STRUCTURE_CONF - directory with sample configuration files