Difference between revisions of "Structure"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) m (Text replace - "]] {| <!--Main settings - REQUIRED-->" to "]] {|<!--Main settings - REQUIRED-->") |
Moskalenko (talk | contribs) m (Text replace - "<!--Compiler and MPI settings - OPTIONAL --> |{" to "|{") |
||
Line 5: | Line 5: | ||
|{{#vardefine:app|structure}} | |{{#vardefine:app|structure}} | ||
|{{#vardefine:url|http://pritch.bsd.uchicago.edu/structure_software/release_versions/v2.3.3/html/structure.html}} | |{{#vardefine:url|http://pritch.bsd.uchicago.edu/structure_software/release_versions/v2.3.3/html/structure.html}} | ||
− | |||
− | |||
− | |||
|{{#vardefine:exe|}} <!--Present manual instructions for running the software --> | |{{#vardefine:exe|}} <!--Present manual instructions for running the software --> | ||
|{{#vardefine:conf|}} <!--Enable config wiki page link - {{#vardefine:conf|1}} = ON/conf|}} = OFF--> | |{{#vardefine:conf|}} <!--Enable config wiki page link - {{#vardefine:conf|1}} = ON/conf|}} = OFF--> |
Revision as of 18:14, 10 August 2012
Description
Structure implements a model-based clustering method for inferring population structure using genotype data consisting of unlinked markers
You will have to provide the mainparams and extraparams files in a working directory from which you run the software. Sample files are located in $HPC_STRUCTURE_CONF directory.
Required Modules
Serial
- structure
- HPC_STRUCTURE_BIN - executable directory
- HPC_STRUCTURE_DOC - documentation directory
- HPC_STRUCTURE_CONF - directory with sample configuration files