Difference between revisions of "Structure"

From UFRC
Jump to navigation Jump to search
m (Text replace - "<!--Choose sections to enable - OPTIONAL--> |{{#vardefine:mod|1}} <!--Present instructions for running the software with modules -->" to "")
m (Text replace - "|{{#vardefine:intel|}} <!-- E.g. "11.1" --> |{{#vardefine:mpi|}} <!-- E.g. "openmpi/1.3.4" -->" to "")
Line 8: Line 8:
 
|{{#vardefine:url|http://pritch.bsd.uchicago.edu/structure_software/release_versions/v2.3.3/html/structure.html}}
 
|{{#vardefine:url|http://pritch.bsd.uchicago.edu/structure_software/release_versions/v2.3.3/html/structure.html}}
 
<!--Compiler and MPI settings - OPTIONAL -->
 
<!--Compiler and MPI settings - OPTIONAL -->
|{{#vardefine:intel|}} <!-- E.g. "11.1" -->
+
 
|{{#vardefine:mpi|}} <!-- E.g. "openmpi/1.3.4" -->
 
  
 
|{{#vardefine:exe|}} <!--Present manual instructions for running the software -->
 
|{{#vardefine:exe|}} <!--Present manual instructions for running the software -->

Revision as of 17:53, 10 August 2012



Description

structure website  

Structure implements a model-based clustering method for inferring population structure using genotype data consisting of unlinked markers

You will have to provide the mainparams and extraparams files in a working directory from which you run the software. Sample files are located in $HPC_STRUCTURE_CONF directory.

Required Modules

modules documentation

Serial

  • structure
  • HPC_STRUCTURE_BIN - executable directory
  • HPC_STRUCTURE_DOC - documentation directory
  • HPC_STRUCTURE_CONF - directory with sample configuration files