Difference between revisions of "Structure"
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directory from which you run the software. Sample files are located in | directory from which you run the software. Sample files are located in | ||
''$HPC_STRUCTURE_CONF'' directory. | ''$HPC_STRUCTURE_CONF'' directory. | ||
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==Available versions== | ==Available versions== | ||
* 2.3.3 | * 2.3.3 | ||
Revision as of 02:00, 10 August 2012
Description
Structure implements a model-based clustering method for inferring population structure using genotype data consisting of unlinked markers
You will have to provide the mainparams and extraparams files in a working directory from which you run the software. Sample files are located in $HPC_STRUCTURE_CONF directory.
Available versions
- 2.3.3
Running the application using modules
To use structure with the environment modules system at HPC the following commands are available:
Get module information for structure:
$module spider structure
Load the default application module:
$module load structure
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_STRUCTURE_DIR - directory where structure is located.
- HPC_STRUCTURE_BIN - executable directory
- HPC_STRUCTURE_DOC - documentation directory
- HPC_STRUCTURE_CONF - directory with sample configuration files