Difference between revisions of "MATS"
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MATS is a computational tool to detect differential alternative splicing events from RNA-Seq data. The statistical model of MATS calculates the P-value and false discovery rate that the difference in the isoform ratio of a gene between two conditions exceeds a given user-defined threshold. From the RNA-Seq data, MATS can automatically detect and analyze alternative splicing events corresponding to all major types of alternative splicing patterns. | MATS is a computational tool to detect differential alternative splicing events from RNA-Seq data. The statistical model of MATS calculates the P-value and false discovery rate that the difference in the isoform ratio of a gene between two conditions exceeds a given user-defined threshold. From the RNA-Seq data, MATS can automatically detect and analyze alternative splicing events corresponding to all major types of alternative splicing patterns. | ||
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==Available versions== | ==Available versions== | ||
Revision as of 02:00, 10 August 2012
Description
MATS is a computational tool to detect differential alternative splicing events from RNA-Seq data. The statistical model of MATS calculates the P-value and false discovery rate that the difference in the isoform ratio of a gene between two conditions exceeds a given user-defined threshold. From the RNA-Seq data, MATS can automatically detect and analyze alternative splicing events corresponding to all major types of alternative splicing patterns.
Available versions
- 2.1.0
Running the application using modules
To use mats with the environment modules system at HPC the following commands are available:
Get module information for mats:
$module spider mats
Load the default application module:
$module load mats
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_MATS_DIR - directory where mats is located.
- HPC_MATS_BIN - executable directory