Difference between revisions of "NGS-SDK"
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|{{#vardefine:app|ngs-sdk}} | |{{#vardefine:app|ngs-sdk}} | ||
Revision as of 15:10, 19 August 2022
Description
NGS is a new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. The API itself is independent from any particular back-end implementation, and supports use of multiple back-ends simultaneously. It also provides a library for building new back-end "engines".
Environment Modules
Run module spider ngs-sdk to find out what environment modules are available for this application.
System Variables
- HPC_NGS-SDK_DIR - installation directory
- HPC_NGS-SDK_BIN - executable directory
- HPC_NGS-SDK_LIB - library directory
- HPC_NGS-SDK_INC - includes directory
- HPC_NGS-SDK_JAVA - java bindings directory
- HPC_NGS-SDK_PYTHON - python bindings directory