Difference between revisions of "UFRC Help and Documentation"

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[[Category:Docs]]
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Welcome to the <span class="plainlinks">[http://www.ufl.edu/ University of Florida] Research Computing Help and Documentation site. General information, announcements, and purchase request forms are on our [https://www.rc.ufl.edu main web site]. The information here is focused on particular applications, services, and usage examples. [https://support.rc.ufl.edu Provide Feedback].</span>
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{| width="100%"
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| style="width: 7%; vertical-align: top" | [[Image:Setup.png|frameless|upright=0.2]]
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| style="padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">FOR NEW USERS</h1>
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Guides to get you started with HPG, and best practices!
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<hr style="margin: 4px 0" />
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<span style="font-size: 12pt">'''[[Getting Started ]]''' | [[Training|Training, Events, Videos]] | [[New user training]] | [[Development_and_Testing|Interactive Development and Testing]] | [[Storage|Practical Storage Use]] </span>
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|}
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{| width="100%"
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| style="width: 7%; vertical-align: top" | [[Image:Access.png|frameless|upright=0.2]]
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| style="padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">ACCESS</h1>
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How to connect to HPG with Duo, authenticate multiple connections, utilize GPUs, or check account.
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<hr style="margin: 4px 0" />
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<span style="font-size: 12pt">'''[[GPU_Access|GPU Access]]''' | [[Authentication With MFA|Multi-Factor Authentication]] | [[SSH Multiplexing]] | [[Blocked Accounts]]</span>
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|}
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<!-- {{Note|Interactive Jobs in the GPU partition are limited to 6 hrs|news}} -->
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|- valign="top"
Welcome to the <span class="plainlinks">[http://www.ufl.edu/ University of Florida] Research Computing Help and Documentation site. General information, policies, and purchase request forms are on our [https://www.rc.ufl.edu main web site]. The information here is focused on particular applications, services, and usage examples. [https://support.rc.ufl.edu Provide Feedback].</span>
 
{{Note|[[https://lists.ufl.edu/cgi-bin/wa?A0=HPC-ANNOUNCE-L HiPerGator News and Announcements]] |news}}
 
=== For New Users ===
 
{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #FF4A00; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
 
|-
 
| scope="col" width="150" |
 
* '''[[Getting Started ]]'''
 
* '''[[Training|Training, Events, Videos]]'''
 
* [[New user training]]
 
| scope="col" width="150" |
 
* [[Development_and_Testing|Interactive Development and Testing]]
 
* [[Storage|Practical Storage Use]]
 
| scope="col" width="150" |
 
* '''[[Get_Help|How To Get Help]]'''</span>
 
* <span class="plainlinks">[https://support.rc.ufl.edu/enter_bug.cgi Submit a Support Request]</span>
 
* [[AI Help|AI Help]]
 
|-
 
|}
 
  
=== Interfaces and Access===
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{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #0021A5; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
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{| width="100%"
|-
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| style="width: 7%; vertical-align: top" | [[Image:Question.png|frameless|upright=0.2]]
| scope="col" width="150" |
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| style="padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">HELP</h1>
* [[Jupyter_Notebooks| Jupyter (Python, R)]]
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Resources to clarify questions, or communicate directly.
* [[Galaxy|Galaxy Genomics Framework]]
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<hr style="margin: 4px 0" />
* [[Open OnDemand|OnDemand (Matlab, RStudio,...)]]
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<span style="font-size: 12pt">'''[[Get_Help|How To Get Help]]''' | <span class="plainlinks">[https://support.rc.ufl.edu/enter_bug.cgi Submit a Support Request]</span> | [[AI Help|AI Help]]</span>
| scope="col" width="150" |
 
* [[Managing Python environments and Jupyter_kernels | Conda and Jupyter Kernels ]]
 
* [[GUI Programs|Running GUI Apps]]
 
* [[GPU_Access|GPU Access]]
 
| scope="col" width="150" |
 
* [[Authentication With MFA|Multi-Factor Authentication]]
 
* [[SSH Multiplexing]]
 
* [[Blocked Accounts]]
 
|-
 
 
|}
 
|}
  
=== Scheduler ===
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||
{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #FF4A00; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
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{| width="100%"
|-
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| style="width: 7%; vertical-align: top" | [[Image:Inter.png|frameless|upright=0.2]]
| scope="col" width="150" |
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| style="padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">INTERFACES</h1>
* [[SLURM_Commands|SLURM Commands]]
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Guides for GUI/web interfaces you can run on HPG.
* [[Account_and_QOS_limits_under_SLURM|Account and QOS Limits Under SLURM]]
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<hr style="margin: 4px 0" />
| scope="col" width="150" |
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<span style="font-size: 12pt"> '''[[Jupyter_Notebooks| Jupyter (Python, R)]]''' | [[Galaxy|Galaxy Genomics Framework]] | [[Open OnDemand|OnDemand (Matlab, RStudio,...)]] | [[Managing Python environments and Jupyter_kernels | Conda and Jupyter Kernels ]] | [[GUI Programs|Running GUI Apps]] </span>
* [[Large-Memory_SMP_Servers|Big Memory Partition]]
 
* [[Available Node Features]]
 
| scope="col" width="150" |
 
* [[Sample_SLURM_Scripts|SLURM Job Script Examples]]
 
* [[SLURM_Job_Arrays|SLURM Job Arrays]]
 
 
|}
 
|}
  
=== Software and Reference Data===
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|- valign="top"
{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #0021A5; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
 
|-
 
| scope="col" width="150" |
 
* [[Applications|Installed Applications]]
 
* [[UFRC_environment_module|HiPerGator ufrc Tools]]
 
| scope="col" width="150" |
 
* [[Modules|Environment Modules System]]
 
  
| scope="col" width="150" |
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* [[Reference Data]]
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{| width="100%"
* [[AI Reference Datasets]]
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| style="width: 7%; vertical-align: top" | [[Image:Scheduler.png|frameless|upright=0.2]]
|-
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| style="padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">SCHEDULER</h1>
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How HPG prioritizes jobs, how to manage them, and more SLURM info.
 +
<hr style="margin: 4px 0" />
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<span style="font-size: 12pt">'''[[SLURM_Commands|SLURM Commands]]''' | [[Account_and_QOS_limits_under_SLURM|Account/QOS Limits Under SLURM]] | [[Large-Memory_SMP_Servers|Big Memory Partition]] | [[Available Node Features]] | [[Sample_SLURM_Scripts|SLURM Job Script Examples]] | [[SLURM_Job_Arrays|SLURM Job Arrays]]</span>
 
|}
 
|}
  
=== Transfer Data ===
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||
{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #FF4A00; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"  
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{| width="100%"
|-
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| style="width: 7%; vertical-align: top" | [[Image:Software.png|frameless|upright=0.2]]
| scope="col" width="150" |
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| style="padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">SOFTWARE AND REFERENCE DATA</h1>
* [[Transfer Data]]
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View installed programs and tools, how to utilize them, and reference data that they can run.
| scope="col" width="150" |
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<hr style="margin: 4px 0" />
* [[Globus]]
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<span style="font-size: 12pt">'''[[Applications|Installed Applications]]''' | [[UFRC_environment_module|HiPerGator ufrc Tools]] | [[Modules|Environment Modules System]] | [[Reference Data]] | [[AI Reference Datasets]]</span>
| scope="col" width="150" |
 
* [[Samba Access]]
 
|-
 
 
|}
 
|}
 
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|- valign="top"
=== Specific Research Areas ===
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||
{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #0021A5; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
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{| width="100%"
|-
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| style="width: 7%; vertical-align: top" | [[Image:Transfer.png|frameless|upright=0.2]]
| scope="col" width="150" |  
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| style="padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">TRANSFER DATA</h1>
* [[Biology|Biology]]
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How to move different sizes of data to and from HPG.
| scope="col" width="150" |
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<hr style="margin: 4px 0" />
| scope="col" width="150" |
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<span style="font-size: 12pt">'''[[Transfer Data]]''' | [[Globus]] | [[Samba Access]]</span>
* [[Nlp|Natural Language Processing]]
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|}
|-
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||
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{| width="100%"
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| style="width: 7%; vertical-align: top" | [[Image:Areas.png|frameless|upright=0.2]]
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| style="padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">SPECIFIC RESEARCH AREAS</h1>
 +
Highlighted areas of specialization commonly seen with HPG.
 +
<hr style="margin: 4px 0" />
 +
<span style="font-size: 12pt">'''[[Biology|Biology]]''' | [[Nlp|Natural Language Processing]]</span>
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|}
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|- valign="top"
 
|}
 
|}
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__NOTOC__
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__NOEDITSECTION__

Revision as of 19:30, 6 July 2022

Welcome to the University of Florida Research Computing Help and Documentation site. General information, announcements, and purchase request forms are on our main web site. The information here is focused on particular applications, services, and usage examples. Provide Feedback.

Setup.png

FOR NEW USERS

Guides to get you started with HPG, and best practices!


Getting Started | Training, Events, Videos | New user training | Interactive Development and Testing | Practical Storage Use

Access.png

ACCESS

How to connect to HPG with Duo, authenticate multiple connections, utilize GPUs, or check account.


GPU Access | Multi-Factor Authentication | SSH Multiplexing | Blocked Accounts


Question.png

HELP

Resources to clarify questions, or communicate directly.


How To Get Help | Submit a Support Request | AI Help

Inter.png

INTERFACES

Guides for GUI/web interfaces you can run on HPG.


Jupyter (Python, R) | Galaxy Genomics Framework | OnDemand (Matlab, RStudio,...) | Conda and Jupyter Kernels | Running GUI Apps

Scheduler.png

SCHEDULER

How HPG prioritizes jobs, how to manage them, and more SLURM info.


SLURM Commands | Account/QOS Limits Under SLURM | Big Memory Partition | Available Node Features | SLURM Job Script Examples | SLURM Job Arrays

Software.png

SOFTWARE AND REFERENCE DATA

View installed programs and tools, how to utilize them, and reference data that they can run.


Installed Applications | HiPerGator ufrc Tools | Environment Modules System | Reference Data | AI Reference Datasets

Transfer.png

TRANSFER DATA

How to move different sizes of data to and from HPG.


Transfer Data | Globus | Samba Access

Areas.png

SPECIFIC RESEARCH AREAS

Highlighted areas of specialization commonly seen with HPG.


Biology | Natural Language Processing