Difference between revisions of "Simka"
Jump to navigation
Jump to search
(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|simka}} |{{#vardefine:url|https://github.com/GATB/simka}} <!--CONFIGURATION:...") |
|||
| Line 10: | Line 10: | ||
|{{#vardefine:testing|}} <!--PROFILING--> | |{{#vardefine:testing|}} <!--PROFILING--> | ||
|{{#vardefine:faq|}} <!--FAQ--> | |{{#vardefine:faq|}} <!--FAQ--> | ||
| − | |{{#vardefine:citation| | + | |{{#vardefine:citation|}} <!--CITATION--> |
|{{#vardefine:installation|}} <!--INSTALLATION--> | |{{#vardefine:installation|}} <!--INSTALLATION--> | ||
|} | |} | ||
Latest revision as of 19:25, 18 February 2021
Description
Simka is a de novo comparative metagenomics tool. Simka represents each dataset as a k-mer spectrum and compute several classical ecological distances between them.
Environment Modules
Run module spider simka to find out what environment modules are available for this application.
System Variables
- HPC_SIMKA_DIR - installation directory
- HPC_SIMKA_BIN - executable directory