QAPA: Difference between revisions
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Latest revision as of 16:54, 15 January 2021
Description
Analysis of alternative polyadenylation (APA) from RNA-seq data (human and mouse). QAPA consists of two main components:
Extraction and annotation of 3′ UTR sequences from gene models Calculation of relative usage of alternative 3′ UTR isoforms based on transcript-level abundance.
Environment Modules
Run module spider qapa to find out what environment modules are available for this application.
System Variables
- HPC_QAPA_DIR - installation directory
- HPC_QAPA_BIN - executable directory
Citation
If you publish research that uses qapa you have to cite it as follows: