Difference between revisions of "SALSA"
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| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
Revision as of 20:06, 10 June 2022
Description
A tool to scaffold long read assemblies with Hi-C
Environment Modules
Run module spider salsa to find out what environment modules are available for this application.
System Variables
- HPC_SALSA_DIR - installation directory
Citation
If you publish research that uses salsa you have to cite it as follows:
Ghurye, J., Pop, M., Koren, S., Bickhart, D., & Chin, C. S. (2017). Scaffolding of long read assemblies using long range contact information. BMC genomics, 18(1), 527. link.