Difference between revisions of "Ngmlr"
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| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
Latest revision as of 16:24, 10 June 2022
Description
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
Environment Modules
Run module spider ngmlr to find out what environment modules are available for this application.
System Variables
- HPC_NGMLR_DIR - installation directory
- HPC_NGMLR_BIN - executable directory
Citation
If you publish research that uses ngmlr you have to cite it as follows:
Accurate detection of complex structural variations using single molecule sequencing