Difference between revisions of "GroopM"
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(Created page with "Category:SoftwareCategory:BiologyCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|groopm}} |{{#vardefine:url|https://github.com/Ecogenomic...") |
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 21:20, 6 December 2019
Description
GroopM is a metagenomic binning toolset. It leverages spatio-temoral dynamics (differential coverage) to accurately (and almost automatically) extract population genomes from multi-sample metagenomic datasets.
Environment Modules
Run module spider groopm to find out what environment modules are available for this application.
System Variables
- HPC_GROOPM_DIR - installation directory
- HPC_GROOPM_BIN - executable directory
Citation
If you publish research that uses groopm you have to cite it as follows:
https://peerj.com/articles/603/