BAPS: Difference between revisions
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==System Variables== | ==System Variables== | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 21:11, 6 December 2019
Description
• The genetic mixture modelling options in the current BAPS software are built on a quite different approach compared to the ordinary latent class model.
• The BAPS mixture model is derived using novel Bayesian predictive classification theory, applied to the population genetics context.
• Also, the computational approach is different and it utilizes the results on nonreversible Metropolis-Hastings algorithm introduced by Corander et al. (Statistics & Computing 2006).
• A variety of different prior assumptions about the molecular data can be utilized in BAPS to make inferences.
Required Modules
Serial
- BAPS
System Variables
- HPC_BAPS_DIR - installation directory
Validation
- Validate 4/5/2018