Difference between revisions of "Newick-utils"
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Revision as of 21:23, 6 December 2019
Description
The Newick Utilities are a suite of Unix shell tools for processing phylogenetic trees. We distribute the package under the BSD License. Functions include re-rooting, extracting subtrees, trimming, pruning, condensing, drawing (ASCII graphics or SVG).
Required Modules
Serial
- newickutils
System Variables
- HPC_NEWICKUTILS_DIR - installation directory
Citation
If you publish research that uses newickutils you have to cite it as follows:
The Newick Utilities: High-throughput Phylogenetic tree Processing in the UNIX Shell. Thomas Junier and Evgeny M. Zdobnov. Bioinformatics 2010 26:1669-1670
http://bioinformatics.oxfordjournals.org/content/26/13/1669.full
doi:10.1093/bioinformatics/btq243
Validation
- Validated 4/5/2018