Newick-utils

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Description

newickutils website  

The Newick Utilities are a suite of Unix shell tools for processing phylogenetic trees. We distribute the package under the BSD License. Functions include re-rooting, extracting subtrees, trimming, pruning, condensing, drawing (ASCII graphics or SVG).

Required Modules

Serial

  • newickutils

System Variables

  • HPC_NEWICKUTILS_DIR - installation directory




Citation

If you publish research that uses newickutils you have to cite it as follows:

The Newick Utilities: High-throughput Phylogenetic tree Processing in the UNIX Shell. Thomas Junier and Evgeny M. Zdobnov. Bioinformatics 2010 26:1669-1670

http://bioinformatics.oxfordjournals.org/content/26/13/1669.full

doi:10.1093/bioinformatics/btq243


Validation

  • Validated 4/5/2018