SALSA: Difference between revisions
Jump to navigation
Jump to search
Moskalenko (talk | contribs) No edit summary |
Moskalenko (talk | contribs) m Text replacement - "#uppercase" to "uc" |
||
| Line 35: | Line 35: | ||
--> | --> | ||
==System Variables== | ==System Variables== | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 21:24, 6 December 2019
Description
A tool to scaffold long read assemblies with Hi-C
Required Modules
Serial
- gcc/5.2.0
- salsa
System Variables
- HPC_SALSA_DIR - installation directory
Citation
If you publish research that uses salsa you have to cite it as follows:
Ghurye, J., Pop, M., Koren, S., Bickhart, D., & Chin, C. S. (2017). Scaffolding of long read assemblies using long range contact information. BMC genomics, 18(1), 527. link.