Difference between revisions of "Structure"
Jump to navigation
Jump to search
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
__NOTOC__ | __NOTOC__ | ||
__NOEDITSECTION__ | __NOEDITSECTION__ | ||
| − | [[Category:Software]][[Category: | + | [[Category:Software]][[Category:Biology]][[Category:Genomics]] |
{|<!--Main settings - REQUIRED--> | {|<!--Main settings - REQUIRED--> | ||
|{{#vardefine:app|structure}} | |{{#vardefine:app|structure}} | ||
Latest revision as of 16:03, 22 August 2022
Description
Structure implements a model-based clustering method for inferring population structure using genotype data consisting of unlinked markers
You will have to provide the mainparams and extraparams files in a working directory from which you run the software or via the arguments:
- -m /path/to/mainparams
- -e /path/to/extraparams
- -s /path/to/STRATparams
Sample files are located in the$HPC_STRUCTURE_CONF directory.
Environment Modules
Run module spider structure to find out what environment modules are available for this application.
System Variables
- HPC_STRUCTURE_DIR - installation directory
- HPC_STRUCTURE_BIN - executable directory
- HPC_STRUCTURE_DOC - documentation directory
- HPC_STRUCTURE_CONF - directory with sample configuration files