Difference between revisions of "Monai"

Latest revision as of 17:46, 5 May 2023

Description

The MONAI framework is the open-source foundation being created by Project MONAI. MONAI is a freely available, community-supported, PyTorch-based framework for deep learning in healthcare imaging. It provides domain-optimized foundational capabilities for developing healthcare imaging training workflows in a native PyTorch paradigm.

Project MONAI also includes MONAI Label, an intelligent open source image labeling and learning tool that helps researchers and clinicians collaborate, create annotated datasets, and build AI models in a standardized MONAI paradigm.

Environment Modules

Run module spider monai to find out what environment modules are available for this application.

System Variables

HPC_MONAI_DIR - installation directory
HPC_MONAI_BIN - executable directory
HPC_MONAI_LIB - library directory

HPC_MONAILABEL_DIR - MONAI label installation directory

More Information

For quick guides on usage for MONAI Core/MONAI Label, visit Monai Usage.

MONAI on HiPerGator Tutorial Recordings and Slides

Recording: MONAI Label for Medical Imaging and slides: MONAICore_tutorial_UF_July_2022.pdf

Recording: MONAI Core

GitHub repository with code examples: https://github.com/hw-ju/monai_uf_tutorials

MONAI 3-day Bootcamp Recordings and Learning Materials

Bootcamp Playlist

MONAI YouTube

MONAI Stream

MONAI Deploy App SDK

Spleen Segmentation Overview

Spleen Segmentation Deepdive

MedNIST Classification

MONAI Packages

If you would like to install MONAI on your own platforms, here are some useful links:

MONAI Core

MONAI Label

MONAI Deploy App SDK

MONAI Core tutorials

Tutorials

@@ Line 1: / Line 1: @@
-[[Category:Software]][[Category:AI]]
+[[Category:Software]][[Category:Healthcare]]
 {|<!--CONFIGURATION: REQUIRED-->
 |{{#vardefine:app|monai}}
@@ Line 30: / Line 30: @@
 * HPC_{{uc:{{#var:app}}}}_LIB - library directory
-==Learning MONAI==
+* HPC_{{uc:{{#var:app}}}}LABEL_DIR - MONAI label installation directory
-MONAI Bootcamp recordings and learning materials:
+==More Information==
+'''For quick guides on usage for MONAI Core/MONAI Label, visit [[Monai Usage]].'''
+=== MONAI on HiPerGator Tutorial Recordings and Slides ===
+* Recording: [https://ufl.zoom.us/rec/play/2O1PqqMU7DJ2mexyn_Jfki3IGGcu3KjLV8iZ2dcT2Wztxx27dIO8g7W_nlWfEnKmoXASRFNBm7ihGWZU.n-AJRZLetesP4X9v?startTime=1658851332000 MONAI Label for Medical Imaging] and slides: [https://github.com/hw-ju/monai_uf_tutorials/blob/main/slides/MONAICore_tutorial_UF_July_2022.pdf MONAICore_tutorial_UF_July_2022.pdf]
+* Recording: [https://ufl.zoom.us/rec/share/4VXkVx0gpN1lrLFpmzOKd3CHqsuKFrok8FaJ2aBorm4KLEPFhWlLkBtHP-IQE_2S.5FNwh3n6D-cCTUJj?startTime=1657641745000 MONAI Core]
+* GitHub repository with code examples: [https://github.com/hw-ju/monai_uf_tutorials https://github.com/hw-ju/monai_uf_tutorials]
+=== MONAI 3-day Bootcamp Recordings and Learning Materials ===
 * [https://urldefense.proofpoint.com/v2/url?u=https-3A__www.youtube.com_playlist-3Flist-3DPLtoSVSQ2XzyCobzE6NvwjNpITsQyPUtfs&d=DwMGaQ&c=sJ6xIWYx-zLMB3EPkvcnVg&r=NSXeOzyqbRdsXM127ZiphQ&m=e1aztAOhx1tyaakucfLf_fPfneoSqzwX6c1D_MpVwvY&s=u-HgmwAUKaQ8wM-Mbt-ePxWJczHlPy4DqujxvvNYrI8&e= Bootcamp Playlist]
+* [https://urldefense.proofpoint.com/v2/url?u=https-3A__www.youtube.com_c_Project-2DMONAI&d=DwMGaQ&c=sJ6xIWYx-zLMB3EPkvcnVg&r=NSXeOzyqbRdsXM127ZiphQ&m=e1aztAOhx1tyaakucfLf_fPfneoSqzwX6c1D_MpVwvY&s=rP_ldLcdRJ6w3fDCh4I0sWuf60WKRUijOsfFYLHxbEk&e= MONAI YouTube]
+* [https://urldefense.proofpoint.com/v2/url?u=https-3A__www.youtube.com_watch-3Fv-3DdbYrpdgB6xs&d=DwMGaQ&c=sJ6xIWYx-zLMB3EPkvcnVg&r=NSXeOzyqbRdsXM127ZiphQ&m=e1aztAOhx1tyaakucfLf_fPfneoSqzwX6c1D_MpVwvY&s=XXAdVEt6MkxyY3wCf5Bmqm6nDKeeqJrVwzU9sZczg2I&e= MONAI Stream]
+=== MONAI Deploy App SDK ===
+* [https://urldefense.proofpoint.com/v2/url?u=https-3A__www.youtube.com_watch-3Fv-3DcqDVxzYt9lY&d=DwMGaQ&c=sJ6xIWYx-zLMB3EPkvcnVg&r=NSXeOzyqbRdsXM127ZiphQ&m=e1aztAOhx1tyaakucfLf_fPfneoSqzwX6c1D_MpVwvY&s=7qseMh2xOcjEG5Dt7_X0P5TPG2whDIzJYIPuadhjqqc&e= Spleen Segmentation Overview]
+* [https://urldefense.proofpoint.com/v2/url?u=https-3A__www.youtube.com_watch-3Fv-3DnivgfD4pwWE&d=DwMGaQ&c=sJ6xIWYx-zLMB3EPkvcnVg&r=NSXeOzyqbRdsXM127ZiphQ&m=e1aztAOhx1tyaakucfLf_fPfneoSqzwX6c1D_MpVwvY&s=na7ktiKAAgwcvRDQwVeucCNCq_19BGYoKytn3-SqvyM&e= Spleen Segmentation Deepdive]
+* [https://urldefense.proofpoint.com/v2/url?u=https-3A__www.youtube.com_watch-3Fv-3DWwjilJFHuU4&d=DwMGaQ&c=sJ6xIWYx-zLMB3EPkvcnVg&r=NSXeOzyqbRdsXM127ZiphQ&m=e1aztAOhx1tyaakucfLf_fPfneoSqzwX6c1D_MpVwvY&s=k10xZSVemV69BMYtvaRmUtuITA8HhFOgF5-QILbLBxw&e= MedNIST Classification]
+=== MONAI Packages ===
+If you would like to install MONAI on your own platforms, here are some useful links:
+* [https://urldefense.proofpoint.com/v2/url?u=https-3A__docs.monai.io_en_latest_whatsnew-5F0-5F7.html&d=DwMGaQ&c=sJ6xIWYx-zLMB3EPkvcnVg&r=NSXeOzyqbRdsXM127ZiphQ&m=e1aztAOhx1tyaakucfLf_fPfneoSqzwX6c1D_MpVwvY&s=m_sJqlsaQQW5dRdUmTcTY6ysyaaCaUPnVVliC6W9SsM&e= MONAI Core]
+* [https://urldefense.proofpoint.com/v2/url?u=https-3A__docs.monai.io_projects_label_en_0.2.0_whatsnew.html&d=DwMGaQ&c=sJ6xIWYx-zLMB3EPkvcnVg&r=NSXeOzyqbRdsXM127ZiphQ&m=e1aztAOhx1tyaakucfLf_fPfneoSqzwX6c1D_MpVwvY&s=XH8yqUKN66lK7HGZnuY-gskf665Joyv04YiC5gh3M3k&e= MONAI Label]
+* [https://urldefense.proofpoint.com/v2/url?u=https-3A__docs.monai.io_projects_monai-2Ddeploy-2Dapp-2Dsdk_en_latest_release-5Fnotes_v0.1.0.html&d=DwMGaQ&c=sJ6xIWYx-zLMB3EPkvcnVg&r=NSXeOzyqbRdsXM127ZiphQ&m=e1aztAOhx1tyaakucfLf_fPfneoSqzwX6c1D_MpVwvY&s=_pzytNZK2W9-eQosc_GnDfRp_DuD7R-yPMTCX9IRDEk&e= MONAI Deploy App SDK]
+=== MONAI Core tutorials ===
+* [https://github.com/Project-MONAI/tutorials Tutorials]
 <!--Configuration-->