Difference between revisions of "Package-GFE"
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Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
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| − | [[Category:Software]][[Category: | + | [[Category:Software]][[Category:Biology]][[Category:Genomics]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|package-gfe}} | |{{#vardefine:app|package-gfe}} | ||
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<!--Modules--> | <!--Modules--> | ||
| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
Latest revision as of 16:45, 10 June 2022
Description
This software package is for estimating allele and genotype frequencies from nucleotide read quartets (read counts of A, C, G, and T) derived from individual high-throughput sequencing data for multiple diploid individuals from a population by a maximum-likelihood (ML) method.
Environment Modules
Run module spider package-gfe to find out what environment modules are available for this application.
System Variables
- HPC_PACKAGE-GFE_DIR - installation directory
Citation
If you publish research that uses package-gfe you have to cite it as follows:
Maruki, T., and Lynch, M., (2015) Genotype-frequency estimation from high-throughput sequencing data. Genetics (in press).