Difference between revisions of "BloomTree"
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Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
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{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|Bloomtree}} | |{{#vardefine:app|Bloomtree}} | ||
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| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
Latest revision as of 16:49, 10 June 2022
Description
The Sequence Bloom Tree (SBT) is a method that will allow you to index a set of short-read sequencing experiments and then query them quickly for a given sequence. The code base provided here is an implementation of SBT written in C++ and is open source.
Environment Modules
Run module spider Bloomtree to find out what environment modules are available for this application.
System Variables
- HPC_BLOOMTREE_DIR - installation directory
Citation
If you publish research that uses Bloomtree you have to cite it as follows: