Difference between revisions of "NOVOPlasty"
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(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|novoplasty}} |{{#vardefine:url|https://github.com/ndierckx/NOVOPlasty}} <!--...") |
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DOC - documentation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_EXE - example directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_CONF - config directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_CIRC - circos directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 21:23, 6 December 2019
Description
NOVOPlasty is a de novo assembler and heteroplasmy/variance caller for short circular genomes.
Environment Modules
Run module spider novoplasty to find out what environment modules are available for this application.
System Variables
- HPC_NOVOPLASTY_DIR - installation directory
- HPC_NOVOPLASTY_BIN - executable directory
- HPC_NOVOPLASTY_DOC - documentation directory
- HPC_NOVOPLASTY_EXE - example directory
- HPC_NOVOPLASTY_CONF - config directory
- HPC_NOVOPLASTY_CIRC - circos directory
Citation
If you publish research that uses novoplasty you have to cite it as follows: