Difference between revisions of "Rcorrector"
Jump to navigation
Jump to search
(Created page with "Category:SoftwareCategory:BiologyCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|rcorrector}} |{{#vardefine:url|https://github.com/mouris...") |
|||
| (2 intermediate revisions by 2 users not shown) | |||
| Line 1: | Line 1: | ||
| − | [[Category:Software | + | [[Category:Software]][[Category:Phylogenetics]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|rcorrector}} | |{{#vardefine:app|rcorrector}} | ||
| Line 26: | Line 26: | ||
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 13:58, 6 June 2022
Description
Rcorrector(RNA-seq error CORRECTOR) is a kmer-based error correction method for RNA-seq data.
Rcorrector can also be applied to other type of sequencing data where the read coverage is non-uniform, such as single-cell sequencing.
Environment Modules
Run module spider rcorrector to find out what environment modules are available for this application.
System Variables
- HPC_RCORRECTOR_DIR - installation directory
- HPC_RCORRECTOR_BIN - executable directory
Citation
If you publish research that uses rcorrector you have to cite it as follows:
Song, L., Florea, L., Rcorrector: Efficient and accurate error correction for Illumina RNA-seq reads. GigaScience. 2015, 4:48.