Difference between revisions of "SHAPEIT"
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| − | [[Category:Software]][[Category:Biology]][[Category: | + | [[Category:Software]][[Category:Biology]][[Category:Variant Calling]] |
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|{{#vardefine:app|shapeit}} | |{{#vardefine:app|shapeit}} | ||
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| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
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Latest revision as of 12:56, 15 August 2022
Description
SHAPEIT is a fast and accurate method for estimation of haplotypes (aka phasing) from genotype or sequencing data.
Environment Modules
Run module spider shapeit to find out what environment modules are available for this application.
System Variables
- HPC_SHAPEIT_DIR - installation directory
Citation
If you publish research that uses shapeit you have to cite it as follows:
https://mathgen.stats.ox.ac.uk/genetics_software/shapeit/shapeit.html#citations