Difference between revisions of "PATHd8"
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(Created page with "Category:SoftwareCategory:biologyCategory:phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|pathd8}} |{{#vardefine:url|http://www2.math.su.se/PATHd8...") |
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{{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | {{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | ||
| − | + | A program for phylogenetic dating of large trees without a molecular clock | |
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 21:22, 6 December 2019
Description
A program for phylogenetic dating of large trees without a molecular clock
Environment Modules
Run module spider pathd8 to find out what environment modules are available for this application.
System Variables
- HPC_PATHD8_DIR - installation directory
- HPC_PATHD8_BIN - executable directory
Citation
If you publish research that uses pathd8 you have to cite it as follows:
The program PATHd8 is based on the manuscript
- Estimating divergence times in large phylogenetic trees by Tom Britton, Cajsa Lisa Anderson, David Jacquet, Samuel Lundqvist and Kåre Bremer, in Systematic Biology 56:5, pp 741 - 752 .
- Britton, T., B. Oxelman, A. Vinnersten, and K. Bremer. 2002. Phylogenetic dating with confidence intervals using mean path lengths. Molecular Phylogenetics and Evolution 24:58-65.