Difference between revisions of "TEToolkit"
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|{{#vardefine:app|tetoolkit}} | |{{#vardefine:app|tetoolkit}} | ||
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| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 20:46, 12 August 2022
Description
TEtranscripts takes RNA-seq (and similar data) and annotates reads to both genes & transposable elements. It then performs differential analysis using DESeq.
Environment Modules
Run module spider tetoolkit to find out what environment modules are available for this application.
System Variables
- HPC_TETOOLKIT_DIR - installation directory
- HPC_TETOOLKIT_BIN - executable directory