Difference between revisions of "BAPS"
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| − | [[Category:Software]] | + | [[Category:Software]][[Category:Biology]][[Category:Genomics]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|BAPS}} | |{{#vardefine:app|BAPS}} | ||
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inferences. | inferences. | ||
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| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
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{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 18:07, 12 August 2022
Description
• The genetic mixture modelling options in the current BAPS software are built on a quite different approach compared to the ordinary latent class model.
• The BAPS mixture model is derived using novel Bayesian predictive classification theory, applied to the population genetics context.
• Also, the computational approach is different and it utilizes the results on nonreversible Metropolis-Hastings algorithm introduced by Corander et al. (Statistics & Computing 2006).
• A variety of different prior assumptions about the molecular data can be utilized in BAPS to make inferences.
Environment Modules
Run module spider BAPS to find out what environment modules are available for this application.
System Variables
- HPC_BAPS_DIR - installation directory