Difference between revisions of "Oases"
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for Molecular Genomics) and Daniel Zerbino (previously at the European | for Molecular Genomics) and Daniel Zerbino (previously at the European | ||
Bioinformatics Institute (EMBL-EBI), now at UC Santa Cruz). | Bioinformatics Institute (EMBL-EBI), now at UC Santa Cruz). | ||
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<!--Modules--> | <!--Modules--> | ||
==Required Modules== | ==Required Modules== | ||
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===Serial=== | ===Serial=== | ||
*{{#var:app}} | *{{#var:app}} | ||
| + | ==System Variables== | ||
| + | * HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | ||
* HPC_OASES_BIN | * HPC_OASES_BIN | ||
* HPC_OASES_DOC | * HPC_OASES_DOC | ||
Revision as of 19:23, 10 August 2012
Description
Oases is a de novo transcriptome assembler designed to produce transcripts from short read sequencing technologies, such as Illumina, SOLiD, or 454 in the absence of any genomic assembly. It was developed by Marcel Schulz (MPI for Molecular Genomics) and Daniel Zerbino (previously at the European Bioinformatics Institute (EMBL-EBI), now at UC Santa Cruz).
Required Modules
Serial
- oases
System Variables
- HPC_{{#uppercase:oases}}_DIR - installation directory
- HPC_OASES_BIN
- HPC_OASES_DOC