Difference between revisions of "FragGeneScan"
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Moskalenko (talk | contribs) m (Text replace - "{{#if: {{#var: mod}}|==Execution Environment and Modules== {{App_Module|app={{#var:app}}|intel={{#var:intel}}|mpi={{#var:mpi}}}}|}}" to "==Required Modules== modules documentation ===Serial=== *{{#var:app}}") |
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FragGeneScan is an application for finding (fragmented) genes in short reads. | FragGeneScan is an application for finding (fragmented) genes in short reads. | ||
<!--Modules--> | <!--Modules--> | ||
| − | + | ==Required Modules== | |
| − | + | [[Modules|modules documentation]] | |
| + | ===Serial=== | ||
| + | *{{#var:app}} | ||
* HPC_FRAGGENESCAN_BIN - executable directory. | * HPC_FRAGGENESCAN_BIN - executable directory. | ||
Two convenience scripts are provided within the FragGeneScan distribution - run_FragGeneScan.pl and post_process.pl - in addition to the main FragGeneScan binary. | Two convenience scripts are provided within the FragGeneScan distribution - run_FragGeneScan.pl and post_process.pl - in addition to the main FragGeneScan binary. | ||
Revision as of 16:55, 10 August 2012
Description
FragGeneScan is an application for finding (fragmented) genes in short reads.
Required Modules
Serial
- fraggenescan
- HPC_FRAGGENESCAN_BIN - executable directory.
Two convenience scripts are provided within the FragGeneScan distribution - run_FragGeneScan.pl and post_process.pl - in addition to the main FragGeneScan binary.
Read the usage documentation for details on how to run the program.
Citation
Mina Rho, Haixu Tang, and Yuzhen Ye. FragGeneScan: Predicting Genes in Short and Error-prone Reads. Nucl. Acids Res., 2010 doi: 10.1093/nar/gkq747