Blast: Difference between revisions
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See [http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=ProgSelectionGuide Blast Program Selection Guide] and the main blast website for more details. | See [http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=ProgSelectionGuide Blast Program Selection Guide] and the main blast website for more details. | ||
<!--Location--> | <!--Location--> | ||
==Location== | ==Location== | ||
The software {{#var:app}} is installed on the cluster in /apps/{{#var:app}}/. | The software {{#var:app}} is installed on the cluster in /apps/{{#var:app}}/ncbi/2.2.25. | ||
<!-- --> | <!-- --> | ||
{{#if: {{#var: mod}}|==Running the application using modules== | {{#if: {{#var: mod}}|==Running the application using modules== | ||
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Get module information for {{lc: {{PAGENAME}}}}: | Get module information for {{lc: {{PAGENAME}}}}: | ||
$module spider {{#var:app}} | $module spider {{#var:app}}_ncbi | ||
{{#if: {{#var:intel}}|Load Intel compiler: {{#tag:pre|$module load intel/{{#var:intel}}}}|}}{{#if: {{#var:mpi}}|Load MPI implementation: {{#tag:pre|$module load {{#var:mpi}}}}|}} | {{#if: {{#var:intel}}|Load Intel compiler: {{#tag:pre|$module load intel/{{#var:intel}}}}|}}{{#if: {{#var:mpi}}|Load MPI implementation: {{#tag:pre|$module load {{#var:mpi}}}}|}} | ||
Load the application module: | Load the application module: | ||
$module load {{#var:app}} | $module load {{#var:app}}_ncbi | ||
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables: | The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables: | ||
Revision as of 18:22, 7 October 2011
Description
{{{name}}} website
See Blast Program Selection Guide and the main blast website for more details.
Location
The software blast is installed on the cluster in /apps/blast/ncbi/2.2.25.
Running the application using modules
To use blast with the environment modules system at HPC the following commands are available:
Get module information for blast:
$module spider blast_ncbi
Load the application module:
$module load blast_ncbi
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
HPC_BLAST_DIR - directory where blast is located.