Revision as of 14:10, 19 March 2024

Welcome to the University of Florida Research Computing Help and Documentation site. General information, announcements, and purchase request forms are on our main web site. The information here is focused on particular applications, services, and usage examples. Provide Feedback.

FOR NEW USERS

Guides to get you started with HPG, and best practices!

Getting Started | Training Videos | Trainings & Events | Interactive Development and Testing | Practical Storage Use

ACCESS

How to connect to HPG with Duo, authenticate multiple connections, or check account.

Multi-Factor Authentication | SSH Multiplexing | SSH Keys | Blocked Accounts | Federated Access and Login

HELP

Resources to ask questions, get support, or communicate directly.

INTERFACES

Guides for GUI/web interfaces you can run on HPG.

Jupyter (Python, R) | Galaxy Genomics Framework | OnDemand (Matlab, RStudio,...) | Conda and Jupyter Kernels | Running GUI Apps

SCHEDULER

How to schedule and manage jobs and resources on HPG and more SLURM info.

SOFTWARE AND REFERENCE DATA

View installed programs and tools, how to utilize them, and reference data that they can run.

Installed Applications | HiPerGator ufrc Tools | Environment Modules System | Reference Data | AI Reference Datasets

TRANSFER DATA

How to move different sizes of data to and from HPG.

Transfer Data | Globus | Samba Access | Sharing Within A Cluster | Rsync

SPECIFIC RESEARCH AREAS

Highlighted areas of specialization commonly seen with HPG.

Biology | Natural Language Processing | Computer Vision

@@ Line 1: / Line 1: @@
-{|align=right
+Welcome to the <span class="plainlinks">[http://www.ufl.edu/ University of Florida] Research Computing Help and Documentation site. General information, announcements, and purchase request forms are on our [https://www.rc.ufl.edu main web site]. The information here is focused on particular applications, services, and usage examples. [https://support.rc.ufl.edu Provide Feedback].</span>
-  |__TOC__
+<br>
-  |}
+<!-- {{Note|Submit a support request at [https://support.rc.ufl.edu https://support.rc.ufl.edu]|warn}} -->
-Welcome to the University of Florida High Performance Computing Center Wiki
+<!-- {{Note|See an important message about EL7->EL8 migration on HiPerGator at [[Rolling Upgrade from RHEL7 to RHEL8]]|warn}} -->
-{|
+{| cellspacing="0" cellpadding="5"
-|-valign="top"
+|- valign="top"
-|
+| width="50%" |
-* [[Getting Started]]
+{| width="100%"
-* [[Getting Help]]
+| style="width: 7%; vertical-align: top" | [[Image:Setup.png|frameless|upright=0.2]]
-* [[Policies]]
+| style="padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">FOR NEW USERS</h1>
-* [[Installed Software]]
+Guides to get you started with HPG, and best practices!
-* [[Common Problems]]
+<hr style="margin: 4px 0" />
-* [[Frequently Asked Questions]]
+<span style="font-size: 12pt">'''[[Getting Started ]]''' | [[Training Videos]] | [[Training|Trainings & Events]] | [[Development_and_Testing|Interactive Development and Testing]] | [[Storage|Practical Storage Use]] </span>
-* [[Schedulers]]
+|}
 ||
-* [[Job Submission Queues]]
+{| width="100%"
-* [[Getting_Started#Torque_Scheduler | Sample Submission Script]]
+| style="width: 7%; vertical-align: top" | [[Image:Access.png|frameless|upright=0.2]]
-* [[Shutdown | Shutdown Activities]]
+| style="padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">ACCESS</h1>
-* [[Cluster Monitoring]]
+How to connect to HPG with Duo, authenticate multiple connections, or check account.
-* [[Operating Environment]]
+<hr style="margin: 4px 0" />
+<span style="font-size: 12pt">'''[[Authentication With MFA|Multi-Factor Authentication]]''' | [[SSH Multiplexing]] | [[Using SSH Keys To Access HPG | SSH Keys]] | [[Blocked Accounts]] | [[Federated_Account_Request|Federated Access]] and [[Federated_login|Login]] </span>
+|}
+|- valign="top"
 ||
-* [[Current Events]]
+{| width="100%"
-* [[Administrivia]]
+| style="width: 7%; vertical-align: top" | [[Image:Question.png|frameless|upright=0.2]]
+| style="padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">HELP</h1>
+Resources to ask questions, get support, or communicate directly.
+<hr style="margin: 4px 0" />
+<span style="font-size: 12pt">'''[[Get_Help|How To Get Help]]'''  | [[AI Help]] | [[FAQ]] | <span class="plainlinks">[https://support.rc.ufl.edu/enter_bug.cgi Submit a Support Request] | [[HiPerGator Metrics]] | [[Remote Support]]</span></span>
 |}
-==Recent News==
-* Due to heavy spamming, we are now requiring that you send a request for an account on the wiki in order to edit the pages. You can send requests to support@hpc.ufl.edu.
-* The UFHPC_SCRATCH Environment Variable has been instituted. Details are located on the [[Scratch]] space page.
-==Multi-Processing==
-* [[OpenMPI]]
-* [[OpenMP]]
-* [[OFED]]
-* [[IB HCA Firmware]]
-==Compilers==
+||
-{| border="1"
+{| width="100%"
-! Language !! Compiler !! Version !! Path
+| style="width: 7%; vertical-align: top" | [[Image:Inter.png|frameless|upright=0.2]]
-|-
+| style="padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">INTERFACES</h1>
-| Fortran || [[Intel]] || 9.1.037 || /opt/intel/fce/9.1.037/bin
+Guides for GUI/web interfaces you can run on HPG.
-|-
+<hr style="margin: 4px 0" />
-| Fortran || [[Intel]] || 9.1.039 (32-bit) || /opt/intel/fc/9.1.039/bin
+<span style="font-size: 12pt"> '''[[Jupyter_Notebooks| Jupyter (Python, R)]]''' | [[Galaxy|Galaxy Genomics Framework]] | [[Open OnDemand|OnDemand (Matlab, RStudio,...)]] | [[Managing Python environments and Jupyter_kernels | Conda and Jupyter Kernels ]] | [[GUI Programs|Running GUI Apps]] </span>
-|-
+|}
-| Fortran || [[GNU]] || 4.1.1-53 || /usr/bin/gfortran
-|-
+|- valign="top"
-| Fortran || [[GNU]] || 3.4.6-8 || /usr/bin/g77
-|-
+||
-| C || [[Intel]] || 9.1.044 || /opt/intel/cce/9.1.044/bin
+{| width="100%"
-|-
+| style="width: 7%; vertical-align: top" | [[Image:Scheduler.png|frameless|upright=0.2]]
-| C || [[GNU]] || 3.4.6 || /usr/bin/gcc
+| style="padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">SCHEDULER</h1>
-|-
+How to schedule and manage jobs and resources on HPG and more SLURM info.
-| C++ || [[Intel]] || 9.1.044 || /opt/intel/cce/9.1.044/bin
+<hr style="margin: 4px 0" />
-|-
+<span style="font-size: 12pt">'''[[SLURM_Commands|Commands]]''' | [[Account_and_QOS_limits_under_SLURM|Account/QOS Limits]] | [[Available Node Features]] | [[Sample_SLURM_Scripts|Job Script Examples]] | [[SLURM_Job_Arrays|Job Arrays]] | [[GPU_Access|GPU Access]] | [[SLURM_Job_States|Job States]] | [[SLURM Partition Limits|Time Limits]]</span>
-| C++ || [[GNU]] || 3.4.6 || /usr/bin/g++
+|}
+||
+{| width="100%"
+| style="width: 7%; vertical-align: top" | [[Image:Software.png|frameless|upright=0.2]]
+| style="padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">SOFTWARE AND REFERENCE DATA</h1>
+View installed programs and tools, how to utilize them, and reference data that they can run.
+<hr style="margin: 4px 0" />
+<span style="font-size: 12pt">'''[[Applications|Installed Applications]]''' | [[UFRC_environment_module|HiPerGator ufrc Tools]] | [[Modules|Environment Modules System]] | [[Reference Data]] | [[AI Reference Datasets]]</span>
+|}
+|- valign="top"
+||
+{| width="100%"
+| style="width: 7%; vertical-align: top" | [[Image:Transfer.png|frameless|upright=0.2]]
+| style="padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">TRANSFER DATA</h1>
+How to move different sizes of data to and from HPG.
+<hr style="margin: 4px 0" />
+<span style="font-size: 12pt">'''[[Transfer Data]]''' | [[Globus]] | [[Samba Access]] | [[Sharing Within A Cluster]] | [[Rsync]] </span>
+|}
+||
+{| width="100%"
+| style="width: 7%; vertical-align: top" | [[Image:Areas.png|frameless|upright=0.2]]
+| style="padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">SPECIFIC RESEARCH AREAS</h1>
+Highlighted areas of specialization commonly seen with HPG.
+<hr style="margin: 4px 0" />
+<span style="font-size: 12pt">'''[[Biology|Biology]]''' | '''[[Nlp|Natural Language Processing]]''' | '''[[Computer Vision]]''' </span>
+|}
+|- valign="top"
 |}
+__NOTOC__
+__NOEDITSECTION__

Difference between revisions of "UFRC Help and Documentation"