Genblastg: Difference between revisions
Created page with "Category:SoftwareCategory:BiologyCategory:Genomics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|genblastg}} |{{#vardefine:url|https://bioconda.github.io/reci..." |
No edit summary |
||
| Line 5: | Line 5: | ||
<!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | <!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | ||
|{{#vardefine:conf|}} <!--CONFIGURATION--> | |{{#vardefine:conf|}} <!--CONFIGURATION--> | ||
|{{#vardefine:exe|}} <!--ADDITIONAL INFO--> | |{{#vardefine:exe|1}} <!--ADDITIONAL INFO--> | ||
|{{#vardefine:job|}} <!--JOB SCRIPTS--> | |{{#vardefine:job|}} <!--JOB SCRIPTS--> | ||
|{{#vardefine:policy|}} <!--POLICY--> | |{{#vardefine:policy|}} <!--POLICY--> | ||
| Line 33: | Line 33: | ||
{{#if: {{#var: exe}}|==Additional Information== | {{#if: {{#var: exe}}|==Additional Information== | ||
To view usage information: | |||
$ module load genblastg | |||
$ genblastG | |||
|}} | |}} | ||
Latest revision as of 18:19, 5 February 2024
Description
genBlast is a program suite, consisting of two programs: genBlastA and genBlastG. genBlastA parses local alignments, or high-scoring segment pairs (HSPs) produced by local sequence alignment programs such as BLAST and WU-BLAST and identify groups of HSPs.
Environment Modules
Run module spider genblastg to find out what environment modules are available for this application.
System Variables
- HPC_GENBLASTG_DIR - installation directory
- HPC_GENBLASTG_BIN - executable directory
Additional Information
To view usage information:
$ module load genblastg
$ genblastG
Citation
If you publish research that uses genblastg you have to cite it as follows:
Rong She, Jeffrey Shih-Chieh Chu, Bora Uyar, Jun Wang, Ke Wang, Nansheng Chen, genBlastG: using BLAST searches to build homologous gene models, Bioinformatics, Volume 27, Issue 15, August 2011, Pages 2141–2143, https://doi.org/10.1093/bioinformatics/btr342