Difference between revisions of "Draft:UFRC Help and Documentation Test"

Latest revision as of 14:03, 30 March 2023

Welcome to the University of Florida Research Computing Help and Documentation site. General information, announcements, and purchase request forms are on our main web site. The information here is focused on particular applications, services, and usage examples. Provide Feedback.

For New Users

Getting Started : This page is intended to help new clients get started on HiPerGator.
Training, Events, Videos: Material for learning HPG, including AI
New user training: Expands upon the content provided in the HiPerGator Account Training in Coursera
Interactive Development and Testing: available options for interactive or small-scale testing work.
Practical Storage Use: Here we discuss practical use of the various shared storage systems on HiPerGator.

Help

How To Get Help
Submit a Support Request
AI Help: resources for understanding/improving ML tasks.

Scheduler

SLURM Commands: useful list includes submitting, checking, and cancelling jobs.
Account and QOS Limits Under SLURM: how HPG prioritizes jobs/resources
Available Node Features: how to specify hardware such as processor families/models.
SLURM Job Script Examples
SLURM Job Arrays: best way to submit a number of identical jobs

Transfer Data - Detailed resource on moving data to/from HPG

Globus: best method if your data files are large, >1GB
Samba Access: most commonly used by UFRC clients for drive mapping to HiPerGator filesystems from their desktops.

Access

GPU Access
Multi-Factor Authentication: How to access HPG with Duo.
SSH Multiplexing: allows multiple connections to HPG without using Duo for every one.
Blocked Accounts: how to know if/why you are blocked.

Interfaces

Jupyter (Python, R): web-based development environment for teaching/testing/developing code.
Galaxy Genomics Framework: web-based framework for biological computing.
OnDemand (Matlab, RStudio,...): web interface for starting and attaching to HiPerGator jobs.
Conda and Jupyter Kernels
How To Run GUI Apps

Software and Reference Data

Installed Applications: List of HPG programs.
HiPerGator ufrc Tools: various internal/external tools in the ufrc module.
Environment Modules System: explains RC's use of modules for containing programs.
Reference Data: repository of reference data accessible to everyone, including AI data.
- AI Reference Datasets

@@ Line 1: / Line 1: @@
-[[Category:Docs]]
+Welcome to the <span class="plainlinks">[http://www.ufl.edu/ University of Florida] Research Computing Help and Documentation site. General information, announcements, and purchase request forms are on our [https://www.rc.ufl.edu main web site]. The information here is focused on particular applications, services, and usage examples. [https://support.rc.ufl.edu Provide Feedback].</span>
-__NOTOC__
-<!-- {{Note|Interactive Jobs in the GPU partition are limited to 6 hrs|news}} -->
-Welcome to the <span class="plainlinks">[http://www.ufl.edu/ University of Florida] Research Computing Help and Documentation site. General information, policies, and purchase request forms are on our [https://www.rc.ufl.edu main web site]. The information here is focused on particular applications, services, and usage examples. [https://support.rc.ufl.edu Provide Feedback].</span>
-{{Note|[[https://lists.ufl.edu/cgi-bin/wa?A0=HPC-ANNOUNCE-L HiPerGator News and Announcements]] |news}}
 {|class-"wikitable" style="border-width:0px;"
 |-
-|style="vertical-align:top; color: #444444;width:60%;"|
+|style="vertical-align:top; color: #444444;width:50%;"|
-'''[[For New Users]]'''
+==[[:Category:Essentials|For New Users]]==
 *[[Getting Started ]]: This page is intended to help new clients get started on HiPerGator.
-*[[Training|Training, Events, Videos]]: Material for learning HPG, including AI
+*[[Trainings|Training, Events, Videos]]: Material for learning HPG, including AI
 *[[New user training]]: Expands upon the content provided in the [https://coursera.org/groups/hipergator-account-training-c6fao/invitation HiPerGator Account Training in Coursera]
 *[[Development_and_Testing|Interactive Development and Testing]]: available options for interactive or small-scale testing work.
 *[[Storage|Practical Storage Use]]:  Here we discuss practical use of the various shared storage systems on HiPerGator.
-'''[[Help]]'''
+==[[:Category:Help|Help]]==
-* '''[[Get_Help|How To Get Help]]''': best order of actions to find the information or help you need.</span>
+* '''[[Get_Help|How To Get Help]]'''</span>
-* <span class="plainlinks">[https://support.rc.ufl.edu/enter_bug.cgi Submit a Support Request]: ticketing system for requesting help.</span>
+* <span class="plainlinks">[https://support.rc.ufl.edu/enter_bug.cgi Submit a Support Request]</span>
 * [[AI Help|AI Help]]: resources for understanding/improving ML tasks.
-'''[[Scheduler]]'''
+==[[:Category:Scheduler|Scheduler]]==
 * [[SLURM_Commands|SLURM Commands]]: useful list includes submitting, checking, and cancelling jobs.
 * [[Account_and_QOS_limits_under_SLURM|Account and QOS Limits Under SLURM]]: how HPG prioritizes jobs/resources
-* [[Large-Memory_SMP_Servers|Big Memory Partition]]: RC's big memory servers and how use them.
 * [[Available Node Features]]: how to specify hardware such as processor families/models.
-* [[Sample_SLURM_Scripts|SLURM Job Script Examples]]: can be used as a template for building your own SLURM submission scripts
+* [[Sample_SLURM_Scripts|SLURM Job Script Examples]]
 * [[SLURM_Job_Arrays|SLURM Job Arrays]]: best way to submit a number of identical jobs
-'''[[Transfer Data]]'''- Detailed resource on moving data to/from HPG
+==[[Transfer Data]] - Detailed resource on moving data to/from HPG==
 * [[Globus]]: best method if your data files are large, >1GB
 * [[Samba Access]]: most commonly used by UFRC clients for drive mapping to HiPerGator filesystems from their desktops.
-|style="vertical-align:top;border:none;width:60%;"|
+|style="vertical-align:top;border:none;width:5%;"|
-'''[[Interfaces]]'''
+|style="vertical-align:top;border:none;width:50%;"|
-* [[Jupyter_Notebooks| Jupyter (Python, R)]]: i think you can go eat a corndog, maybe add some mustard while you're at it.
+==Access==
-* [[Galaxy|Galaxy Genomics Framework]]
+* [[GPU_Access|GPU Access]]
-* [[Open OnDemand|OnDemand (Matlab, RStudio,...)]]
+* [[Authentication With MFA|Multi-Factor Authentication]]: How to access HPG with Duo.
+* [[SSH Multiplexing]]: allows multiple connections to HPG without using Duo for every one.
+* [[Blocked Accounts]]: how to know if/why you are blocked.
+==Interfaces==
+* [[Jupyter_Notebooks| Jupyter (Python, R)]]: web-based development environment for teaching/testing/developing code.
+* [[Galaxy|Galaxy Genomics Framework]]: web-based framework for biological computing.
+* [[Open OnDemand|OnDemand (Matlab, RStudio,...)]]: web interface for starting and attaching to HiPerGator jobs.
 * [[Managing Python environments and Jupyter_kernels | Conda and Jupyter Kernels ]]
-* [[GUI Programs|Running GUI Apps]]
+* [[GUI Programs|How To Run GUI Apps]]
-'''[[Access]]'''
-* [[GPU_Access|GPU Access]]
-* [[Authentication With MFA|Multi-Factor Authentication]]
-* [[SSH Multiplexing]]
-* [[Blocked Accounts]]
-'''[[Software and Reference Data]]'''
+==[[:Category:Applications|Software and Reference Data]]==
-* [[Applications|Installed Applications]]
+* [[Applications|Installed Applications]]: List of HPG programs.
-* [[UFRC_environment_module|HiPerGator ufrc Tools]]
+* [[UFRC_environment_module|HiPerGator ufrc Tools]]: various internal/external tools in the ufrc module.
-* [[Modules|Environment Modules System]]
+* [[Modules|Environment Modules System]]: explains RC's use of modules for containing programs.
-* [[Reference Data]]
+* [[Reference Data]]: repository of reference data accessible to everyone, including AI data.
-* [[AI Reference Datasets]]
+** [[AI Reference Datasets]]
-'''[[Specific Research Areas]]'''
+==Specific Research Areas==
 * [[Biology|Biology]]
 * [[Nlp|Natural Language Processing]]
 |}
+__NOTOC__