Difference between revisions of "SALSA"
Jump to navigation
Jump to search
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
| − | [[Category:Software]][[Category:Biology]] | + | [[Category:Software]][[Category:Biology]][[Category:NGS]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|salsa}} | |{{#vardefine:app|salsa}} | ||
Latest revision as of 20:11, 24 August 2022
Description
A tool to scaffold long read assemblies with Hi-C
Environment Modules
Run module spider salsa to find out what environment modules are available for this application.
System Variables
- HPC_SALSA_DIR - installation directory
Citation
If you publish research that uses salsa you have to cite it as follows:
Ghurye, J., Pop, M., Koren, S., Bickhart, D., & Chin, C. S. (2017). Scaffolding of long read assemblies using long range contact information. BMC genomics, 18(1), 527. link.