Difference between revisions of "Metaxa2"
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| − | [[Category:Software]][[Category:Biology]][[Category:NGS]] | + | [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:sequencing]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|metaxa2}} | |{{#vardefine:app|metaxa2}} | ||
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<!--Modules--> | <!--Modules--> | ||
| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 19:29, 18 August 2022
Description
Metaxa2 is a software tool for automated detection and discrimination among ribosomal small subunit (12S/16S/18S) sequences of archaea, bacteria, eukaryotes, mitochondria, and chloroplasts in metagenomes and environmental sequencing datasets.
Environment Modules
Run module spider metaxa2 to find out what environment modules are available for this application.
System Variables
- HPC_METAXA2_DIR - installation directory
Citation
If you publish research that uses metaxa2 you have to cite it as follows: