Difference between revisions of "Illumina-utils"
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Latest revision as of 18:43, 15 August 2022
Description
This is a small library and a bunch of clients to perform various operations on FASTQ files (such as demultiplexing raw Illumina files, merging partial or complete overlaps, and/or performing quality filtering). It works with paired-end FASTQ files and has been tested with Illumina runs processed with CASAVA version 1.8.0 or higher.
Environment Modules
Run module spider illumina-utils to find out what environment modules are available for this application.
System Variables
- HPC_ILLUMINA-UTILS_DIR - installation directory
- HPC_ILLUMINA-UTILS_BIN - executable directory
Citation
If you publish research that uses illumina-utils you have to cite it as follows:
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0066643