Difference between revisions of "Nimare"
Johnbullard (talk | contribs) (Created page with "Category:Software Category:Neuroimaging {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|nimare}} |{{#vardefine:url|https://nimare.readthedocs.io/en/latest/}} <!--CO...") |
|||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
[[Category:Software]] | [[Category:Software]] | ||
| − | [[Category: | + | [[Category:imaging]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|nimare}} | |{{#vardefine:app|nimare}} | ||
Latest revision as of 15:27, 15 August 2022
Description
nimare website
NiMARE is a Python package for performing meta-analyses, and derivative analyses using meta-analytic data, of the neuroimaging literature. While meta-analytic packages exist which implement one or two algorithms each, NiMARE provides a standard syntax for performing a wide range of analyses and for interacting with databases of coordinates and images from fMRI studies (e.g., brainspell, Neurosynth, and NeuroVault).
https://github.com/neurostuff/NiMARE
Environment Modules
Run module spider nimare to find out what environment modules are available for this application.
System Variables
- HPC_NIMARE_DIR - installation directory
- HPC_NIMARE_BIN - executable directory
Citation
If you publish research that uses nimare you have to cite it as follows:
NiMARE provides several workflows as command-line interfaces, including ALE meta-analysis, meta-analytic coactivation modeling (MACM) analysis, peaks2maps image reconstruction, and contrast map meta-analysis. Each workflow should generate a boilerplate paragraph with details about the workflow and citations that can be used in a manuscript.