SVDetect: Difference between revisions
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[[Category:Software]][[Category: | [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]] | ||
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|svdetect}} | |{{#vardefine:app|svdetect}} | ||
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The [http://svdetect.sourceforge.net/Site/Manual.html SVDetect online Manual] is available. | The [http://svdetect.sourceforge.net/Site/Manual.html SVDetect online Manual] is available. | ||
<!--Modules--> | <!--Modules--> | ||
== | ==Environment Modules== | ||
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |||
< | |||
==System Variables== | ==System Variables== | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 20:46, 12 August 2022
Description
SVDetect is a application for the isolation and the type prediction of intra- and inter-chromosomal rearrangements from paired-end/mate-pair sequencing data provided by the high-throughput sequencing technologies
This tool aims to identifying structural variations with both clustering and sliding-window strategies, and helping in their visualization at the genome scale.
SVDetect is compatible with SOLiD and Illumina (>=1.3) reads.
The SVDetect online Manual is available.
Environment Modules
Run module spider svdetect to find out what environment modules are available for this application.
System Variables
- HPC_SVDETECT_DIR - installation directory