Difference between revisions of "Stampy"
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|{{#vardefine:app|stampy}} | |{{#vardefine:app|stampy}} | ||
Latest revision as of 20:45, 12 August 2022
Description
Stampy is a package for the mapping of short reads from illumina sequencing machines onto a reference genome. It's recommended for most workflows, including those for genomic resequencing, RNA-Seq and Chip-seq. Stampy excels in the mapping of reads containing that contain sequence variation relative to the reference, in particular for those containing insertions or deletions. It can map reads from a highly divergent species to a reference genome for instance. Stampy achieves high sensitivity and speed by using a fast hashing algorithm and a detailed statistical model.
Environment Modules
Run module spider stampy to find out what environment modules are available for this application.
System Variables
- HPC_STAMPY_DIR - installation directory
- HPC_STAMPY_BIN - executable directory