Difference between revisions of "NucleoATAC"
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Latest revision as of 20:08, 12 August 2022
Description
Python package for calling nucleosomes using ATAC-seq data. Also includes general scripts for working with paired-end ATAC-seq data (or potentially other paired-end data).
Environment Modules
Run module spider nucleoatac to find out what environment modules are available for this application.
System Variables
- HPC_NUCLEOATAC_DIR - installation directory
- HPC_NUCLEOATAC_BIN - executable directory
Citation
If you publish research that uses nucleoatac you have to cite it as follows:
Schep, Alicia N., et al. "Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions." Genome research 25.11 (2015): 1757-1770.