Difference between revisions of "NucleoATAC"
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| − | [[Category:Software]][[Category:biology | + | [[Category:Software]][[Category:biology]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|nucleoatac}} | |{{#vardefine:app|nucleoatac}} | ||
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{{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | {{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | ||
| − | + | Python package for calling nucleosomes using ATAC-seq data. Also includes general scripts for working with paired-end ATAC-seq data (or potentially other paired-end data). | |
<!--Modules--> | <!--Modules--> | ||
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 20:08, 12 August 2022
Description
Python package for calling nucleosomes using ATAC-seq data. Also includes general scripts for working with paired-end ATAC-seq data (or potentially other paired-end data).
Environment Modules
Run module spider nucleoatac to find out what environment modules are available for this application.
System Variables
- HPC_NUCLEOATAC_DIR - installation directory
- HPC_NUCLEOATAC_BIN - executable directory
Citation
If you publish research that uses nucleoatac you have to cite it as follows:
Schep, Alicia N., et al. "Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions." Genome research 25.11 (2015): 1757-1770.