Difference between revisions of "Structure"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
|||
| Line 30: | Line 30: | ||
Sample files are located in the''$HPC_STRUCTURE_CONF'' directory. | Sample files are located in the''$HPC_STRUCTURE_CONF'' directory. | ||
<!--Modules--> | <!--Modules--> | ||
| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
| − | |||
| − | |||
==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
| Line 55: | Line 53: | ||
WRITE CITATION HERE | WRITE CITATION HERE | ||
|}} | |}} | ||
| − | |||
| − | |||
Revision as of 17:05, 10 June 2022
Description
Structure implements a model-based clustering method for inferring population structure using genotype data consisting of unlinked markers
You will have to provide the mainparams and extraparams files in a working directory from which you run the software or via the arguments:
- -m /path/to/mainparams
- -e /path/to/extraparams
- -s /path/to/STRATparams
Sample files are located in the$HPC_STRUCTURE_CONF directory.
Environment Modules
Run module spider structure to find out what environment modules are available for this application.
System Variables
- HPC_STRUCTURE_DIR - installation directory
- HPC_STRUCTURE_BIN - executable directory
- HPC_STRUCTURE_DOC - documentation directory
- HPC_STRUCTURE_CONF - directory with sample configuration files