DeconSeq: Difference between revisions
Jump to navigation
Jump to search
Moskalenko (talk | contribs) m Text replacement - "#uppercase" to "uc" |
No edit summary |
||
| Line 21: | Line 21: | ||
<!--Modules--> | <!--Modules--> | ||
== | ==Environment Modules== | ||
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |||
< | |||
==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
Latest revision as of 17:00, 10 June 2022
Description
The DeconSeq tool can be used to automatically detect and efficiently remove sequence contaminations from genomic and metagenomic datasets. It is easily configurable and provides a user-friendly interface.
Environment Modules
Run module spider deconseq to find out what environment modules are available for this application.
System Variables
- HPC_DECONSEQ_DIR - installation directory
Additional Information
This module also includes PrinSeq.
Citation
If you publish research that uses deconseq you have to cite it as follows: