Ngmlr: Difference between revisions
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Created page with "Category:SoftwareCategory:BiologyCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|ngmlr}} |{{#vardefine:url|https://github.com/philres/ngm..." |
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<!--Modules--> | <!--Modules--> | ||
== | ==Environment Modules== | ||
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |||
< | |||
==System Variables== | ==System Variables== | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 16:24, 10 June 2022
Description
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
Environment Modules
Run module spider ngmlr to find out what environment modules are available for this application.
System Variables
- HPC_NGMLR_DIR - installation directory
- HPC_NGMLR_BIN - executable directory
Citation
If you publish research that uses ngmlr you have to cite it as follows:
Accurate detection of complex structural variations using single molecule sequencing