Rcorrector: Difference between revisions
Jump to navigation
Jump to search
Moskalenko (talk | contribs) m Text replacement - "#uppercase" to "uc" |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
[[Category:Software | [[Category:Software]][[Category:Phylogenetics]] | ||
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|rcorrector}} | |{{#vardefine:app|rcorrector}} | ||
Latest revision as of 13:58, 6 June 2022
Description
Rcorrector(RNA-seq error CORRECTOR) is a kmer-based error correction method for RNA-seq data.
Rcorrector can also be applied to other type of sequencing data where the read coverage is non-uniform, such as single-cell sequencing.
Environment Modules
Run module spider rcorrector to find out what environment modules are available for this application.
System Variables
- HPC_RCORRECTOR_DIR - installation directory
- HPC_RCORRECTOR_BIN - executable directory
Citation
If you publish research that uses rcorrector you have to cite it as follows:
Song, L., Florea, L., Rcorrector: Efficient and accurate error correction for Illumina RNA-seq reads. GigaScience. 2015, 4:48.