Difference between revisions of "Panseq"
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Latest revision as of 16:12, 17 November 2021
Description
Panseq determines the core and accessory regions among a collection of genomic sequences based on user-defined parameters. It readily extracts regions unique to a genome or group of genomes, identifies SNPs within shared core genomic regions, constructs files for use in phylogeny programs based on both the presence/absence of accessory regions and SNPs within core regions.
Environment Modules
Run module spider panseq to find out what environment modules are available for this application.
System Variables
- HPC_PANSEQ_DIR - installation directory
- HPC_PANSEQ_BIN - executable directory