Difference between revisions of "AmPEPpy"
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Latest revision as of 14:13, 22 April 2021
Description
amPEPpy is a Python 3 application that implements a random forest classifier for predicting antimicrobial peptide sequences using the Distribution descriptor set from the Global Protein Sequence Descriptors. amPEPpy has improved portability, increased accuracy relative to similar methods, and includes utilities for easily training and optimizing random forest classifiers on novel training data.
Environment Modules
Run module spider ampeppy
to find out what environment modules are available for this application.
System Variables
- HPC_AMPEPPY_DIR - installation directory
- HPC_AMPEPPY_BIN - executable directory
Citation
If you publish research that uses ampeppy you have to cite it as follows:
https://github.com/tlawrence3/amPEPpy#citing